Variant report
| Variant | rs56158165 |
|---|---|
| Chromosome Location | chr10:22553577-22553578 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22535007..22537122-chr10:22551537..22554179,2 | K562 | blood: | |
| 2 | chr10:22553134..22554722-chr10:22557996..22559546,2 | K562 | blood: | |
| 3 | chr10:22545566..22547300-chr10:22552900..22554689,2 | K562 | blood: | |
| 4 | chr10:22544531..22547171-chr10:22552143..22554351,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261671 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10466081 | 0.88[EUR][1000 genomes] |
| rs10508642 | 0.88[EUR][1000 genomes] |
| rs11012890 | 0.88[EUR][1000 genomes] |
| rs11012892 | 0.88[EUR][1000 genomes] |
| rs11012893 | 0.82[EUR][1000 genomes] |
| rs11012894 | 0.88[EUR][1000 genomes] |
| rs11012912 | 0.81[EUR][1000 genomes] |
| rs11812422 | 0.82[EUR][1000 genomes] |
| rs12250660 | 0.88[EUR][1000 genomes] |
| rs12257323 | 0.88[EUR][1000 genomes] |
| rs12257355 | 0.88[EUR][1000 genomes] |
| rs12262200 | 0.82[EUR][1000 genomes] |
| rs57066906 | 0.88[EUR][1000 genomes] |
| rs57562594 | 0.88[EUR][1000 genomes] |
| rs59489318 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73596576 | 0.88[EUR][1000 genomes] |
| rs73596577 | 0.88[EUR][1000 genomes] |
| rs73596578 | 0.88[EUR][1000 genomes] |
| rs73596588 | 0.83[EUR][1000 genomes] |
| rs74121381 | 0.82[EUR][1000 genomes] |
| rs7894862 | 0.82[EUR][1000 genomes] |
| rs7900749 | 0.94[EUR][1000 genomes] |
| rs7905885 | 0.82[EUR][1000 genomes] |
| rs7915647 | 0.88[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
