Variant report

Variant	rs11812422
Chromosome Location	chr10:22533935-22533936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22525605..22527160-chr10:22533029..22535621,2	K562	blood:
2	chr10:22532104..22538523-chr10:22539605..22546070,9	MCF-7	breast:
3	chr10:22528332..22532330-chr10:22533041..22536116,4	K562	blood:
4	chr10:22532777..22535733-chr10:22725259..22727750,2	MCF-7	breast:
5	chr10:22532066..22534921-chr10:22539657..22541177,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNAJC1-1	chr10:22533728-22536734	XLOC_008747

No data

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10159630	1.00[ASN][1000 genomes]
rs10159673	1.00[ASN][1000 genomes]
rs10159675	1.00[ASN][1000 genomes]
rs10160187	1.00[ASN][1000 genomes]
rs10466081	0.94[EUR][1000 genomes]
rs10508642	0.94[EUR][1000 genomes]
rs11012890	0.94[EUR][1000 genomes]
rs11012892	0.94[EUR][1000 genomes]
rs11012893	1.00[EUR][1000 genomes]
rs11012894	0.94[EUR][1000 genomes]
rs12250660	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12253729	1.00[ASN][1000 genomes]
rs12257323	0.94[EUR][1000 genomes]
rs12257355	0.94[EUR][1000 genomes]
rs12262200	1.00[EUR][1000 genomes]
rs12264839	0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268709	1.00[ASN][1000 genomes]
rs1327691	1.00[ASN][1000 genomes]
rs16922112	0.84[EUR][1000 genomes]
rs56158165	0.82[EUR][1000 genomes]
rs56911002	1.00[ASN][1000 genomes]
rs57066906	0.94[EUR][1000 genomes]
rs57562594	0.94[EUR][1000 genomes]
rs57796255	1.00[ASN][1000 genomes]
rs59961880	1.00[ASN][1000 genomes]
rs6482205	1.00[ASN][1000 genomes]
rs73596576	0.94[EUR][1000 genomes]
rs73596577	0.94[EUR][1000 genomes]
rs73596578	0.94[EUR][1000 genomes]
rs73596579	1.00[ASN][1000 genomes]
rs74121381	1.00[EUR][1000 genomes]
rs74121390	1.00[ASN][1000 genomes]
rs74121391	1.00[ASN][1000 genomes]
rs7894862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900749	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7905885	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915647	0.97[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22533400-22534400	Enhancers	A549	lung
2	chr10:22533600-22534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links