Variant report

Variant	rs7900749
Chromosome Location	chr10:22537264-22537265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22535771..22537310-chr11:62607206..62609672,2	MCF-7	breast:
2	chr10:22536525..22546833-chr10:22602936..22612723,20	MCF-7	breast:
3	chr10:22532104..22538523-chr10:22539605..22546070,9	MCF-7	breast:
4	chr10:22522942..22525681-chr10:22535705..22539316,3	K562	blood:
5	chr10:22516724..22519757-chr10:22535657..22538492,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000148444	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10466081	0.94[EUR][1000 genomes]
rs10508642	0.94[EUR][1000 genomes]
rs11012890	0.94[EUR][1000 genomes]
rs11012892	0.94[EUR][1000 genomes]
rs11012893	0.89[EUR][1000 genomes]
rs11012894	0.94[EUR][1000 genomes]
rs11812422	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12250660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257323	0.94[EUR][1000 genomes]
rs12257355	0.94[EUR][1000 genomes]
rs12262200	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264839	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16922112	0.84[EUR][1000 genomes]
rs56158165	0.94[EUR][1000 genomes]
rs57066906	0.94[EUR][1000 genomes]
rs57562594	0.94[EUR][1000 genomes]
rs59489318	0.84[EUR][1000 genomes]
rs73596576	0.94[EUR][1000 genomes]
rs73596577	0.94[EUR][1000 genomes]
rs73596578	0.94[EUR][1000 genomes]
rs74121381	0.89[EUR][1000 genomes]
rs7894862	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7905885	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7915647	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22534000-22540000	Weak transcription	Primary B cells from cord blood	blood
2	chr10:22534400-22540200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:22534600-22537600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:22534600-22540200	Weak transcription	HSMMtube	muscle
5	chr10:22534800-22537400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:22534800-22539000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:22534800-22540200	Weak transcription	Brain Angular Gyrus	brain
8	chr10:22535000-22540000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:22535600-22538400	Weak transcription	Fetal Brain Male	brain
10	chr10:22535600-22539400	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:22535800-22539400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:22536600-22537600	Enhancers	Hela-S3	cervix
13	chr10:22536600-22539200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:22536600-22539200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:22536600-22539200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:22536600-22539600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:22536600-22540200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:22536600-22540200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:22536600-22540200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:22536800-22537400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:22536800-22539400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:22536800-22539800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:22536800-22540000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:22536800-22540000	Weak transcription	NHEK	skin
25	chr10:22536800-22540200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:22536800-22540200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:22536800-22540200	Weak transcription	Stomach Mucosa	stomach
28	chr10:22536800-22540200	Weak transcription	HSMM	muscle
29	chr10:22536800-22540200	Weak transcription	HUVEC	blood vessel
30	chr10:22536800-22540200	Weak transcription	NH-A	brain
31	chr10:22536800-22540200	Weak transcription	NHDF-Ad	bronchial
32	chr10:22536800-22540200	Weak transcription	NHLF	lung
33	chr10:22536800-22540400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:22537000-22537400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:22537000-22537400	Enhancers	A549	lung
36	chr10:22537000-22539200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:22537000-22539600	Weak transcription	Osteobl	bone
38	chr10:22537000-22540200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:22537000-22540200	Weak transcription	HMEC	breast
40	chr10:22537200-22540000	Weak transcription	Muscle Satellite Cultured Cells	--

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