Variant report
Variant | rs57562594 |
---|---|
Chromosome Location | chr10:22497839-22497840 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:22483555..22486154-chr10:22496600..22498196,2 | K562 | blood: | |
2 | chr10:22496420..22499668-chr10:22505948..22508312,3 | K562 | blood: | |
3 | chr10:22496707..22498411-chr10:22506547..22508415,2 | MCF-7 | breast: | |
4 | chr10:22472191..22474843-chr10:22495590..22498167,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000260205 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10466081 | 1.00[EUR][1000 genomes] |
rs10508642 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11012890 | 1.00[EUR][1000 genomes] |
rs11012892 | 1.00[EUR][1000 genomes] |
rs11012893 | 0.94[EUR][1000 genomes] |
rs11012894 | 1.00[EUR][1000 genomes] |
rs11812422 | 0.94[EUR][1000 genomes] |
rs12250660 | 1.00[EUR][1000 genomes] |
rs12257323 | 1.00[EUR][1000 genomes] |
rs12257355 | 1.00[EUR][1000 genomes] |
rs12262200 | 0.94[EUR][1000 genomes] |
rs12264839 | 0.88[EUR][1000 genomes] |
rs16922112 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs56158165 | 0.88[EUR][1000 genomes] |
rs57066906 | 1.00[EUR][1000 genomes] |
rs73596576 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73596577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73596578 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74121381 | 0.94[EUR][1000 genomes] |
rs7894862 | 0.94[EUR][1000 genomes] |
rs7900749 | 0.94[EUR][1000 genomes] |
rs7905885 | 0.94[EUR][1000 genomes] |
rs7915647 | 0.88[EUR][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:22495000-22498000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |