Variant report

Variant	rs1039050
Chromosome Location	chr4:81339910-81339911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1039051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11724367	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12642262	0.82[AFR][1000 genomes]
rs1353375	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1495488	0.88[AFR][1000 genomes]
rs1874334	0.89[AFR][1000 genomes]
rs4693100	0.93[AFR][1000 genomes]
rs4693688	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534931	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826195	0.85[YRI][hapmap]
rs6849232	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7665080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917963	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1039050	DDX6	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81335000-81343600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:81339000-81343600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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