Variant report

Variant	rs7665080
Chromosome Location	chr4:81345600-81345601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1039050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1039051	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11724367	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12642262	0.89[AFR][1000 genomes]
rs1353375	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1495483	0.85[AFR][1000 genomes]
rs1495485	0.84[AFR][1000 genomes]
rs1495488	0.96[AFR][1000 genomes]
rs1874334	0.82[AFR][1000 genomes]
rs4693100	0.86[AFR][1000 genomes]
rs4693688	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534931	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826195	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7691290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917963	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81343600-81345600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr4:81344600-81345600	Flanking Active TSS	K562	blood
3	chr4:81345200-81346800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:81345600-81346800	Enhancers	K562	blood
5	chr4:81345600-81348800	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links