Variant report

Variant	rs1495488
Chromosome Location	chr4:81334281-81334282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1039050	0.88[AFR][1000 genomes]
rs1039051	0.87[AFR][1000 genomes]
rs12642262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1495483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1495485	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1874334	0.86[AFR][1000 genomes]
rs2007145	0.83[AMR][1000 genomes]
rs4693021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4693100	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4693384	0.83[AMR][1000 genomes]
rs4693688	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6534890	0.83[AMR][1000 genomes]
rs6826195	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7665080	0.96[AFR][1000 genomes]
rs7691290	0.96[AFR][1000 genomes]
rs9917963	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81328800-81334800	Weak transcription	Osteobl	bone
2	chr4:81331200-81334600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:81331600-81334800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:81332200-81334600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:81334200-81334800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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