Variant report

Variant	rs10399614
Chromosome Location	chr1:173310634-173310635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173309355..173311002-chr6:166669420..166672417,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11804254	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1361648	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539256	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539257	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845679	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845685	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845722	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16845795	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16845819	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55882207	0.86[EUR][1000 genomes]
rs56307807	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56309152	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6688438	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7550607	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv523009	chr1:173305632-173324296	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173299200-173311200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:173299200-173316600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:173299800-173316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:173301400-173321200	Weak transcription	Ovary	ovary
6	chr1:173301600-173311000	Weak transcription	Gastric	stomach
7	chr1:173309000-173312400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:173309200-173324600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:173309600-173311200	Enhancers	NH-A	brain
10	chr1:173309600-173312000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:173310000-173311200	Enhancers	NHDF-Ad	bronchial
12	chr1:173310000-173311200	Enhancers	Osteobl	bone
13	chr1:173310000-173311400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:173310000-173311400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:173310000-173311600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:173310000-173311800	Enhancers	HSMMtube	muscle
17	chr1:173310000-173312000	Enhancers	HSMM	muscle
18	chr1:173310200-173311400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:173310200-173312000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:173310400-173311200	Enhancers	Right Atrium	heart
21	chr1:173310600-173310800	Enhancers	Stomach Smooth Muscle	stomach
22	chr1:173310600-173311200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:173310600-173311200	Enhancers	Psoas Muscle	Psoas

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