Variant report

Variant	rs16845722
Chromosome Location	chr1:173327505-173327506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173327121..173329695-chr1:173331710..173334365,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231615	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10399614	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11804254	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342033	0.87[CHB][hapmap]
rs1342034	0.87[CHB][hapmap]
rs1361648	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1547811	0.87[CHB][hapmap]
rs16845679	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16845685	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16845795	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16845819	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1935325	0.87[CHB][hapmap]
rs1935331	0.87[CHB][hapmap]
rs1985177	0.87[CHB][hapmap]
rs2027500	0.87[CHB][hapmap]
rs2901719	0.87[CHB][hapmap]
rs4258254	0.85[CHB][hapmap]
rs4916334	0.87[CHB][hapmap]
rs4916335	0.87[CHB][hapmap]
rs4916336	0.87[CHB][hapmap]
rs55882207	0.95[EUR][1000 genomes]
rs56307807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56309152	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425221	0.87[CHB][hapmap]
rs6688438	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548710	0.87[CHB][hapmap]
rs7550607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16845722	NME7	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
3	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
4	chr1:173325000-173329400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:173325200-173328800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:173325800-173329600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:173326000-173329600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:173326200-173329600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:173326200-173329600	Weak transcription	Dnd41	blood
10	chr1:173326200-173329800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:173326600-173329200	Weak transcription	GM12878-XiMat	blood

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