Variant report

Variant	rs56309152
Chromosome Location	chr1:173332165-173332166
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10399614	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11804254	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1361648	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539256	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539257	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16845679	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16845685	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16845722	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16845795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16845819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55882207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56307807	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6688438	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7550607	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
2	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
3	chr1:173330400-173337000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:173330400-173344800	Weak transcription	Primary T cells from cord blood	blood
5	chr1:173330400-173355400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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