Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10399614	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11804254	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1342033	0.87[CHB][hapmap]
rs1342034	0.88[CHB][hapmap]
rs1361648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539256	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539257	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547811	0.87[CHB][hapmap]
rs16845679	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16845685	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16845722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16845819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1935325	0.88[CHB][hapmap]
rs1935331	0.88[CHB][hapmap]
rs1985177	0.87[CHB][hapmap]
rs2027500	0.87[CHB][hapmap]
rs2901719	0.88[CHB][hapmap]
rs4258254	0.86[CHB][hapmap]
rs4916334	0.87[CHB][hapmap]
rs4916335	0.87[CHB][hapmap]
rs4916336	0.87[CHB][hapmap]
rs55882207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56307807	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56309152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425221	0.87[CHB][hapmap]
rs6688438	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7548710	0.87[CHB][hapmap]
rs7550607	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173330400-173355400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:173345600-173368000	Weak transcription	Primary T cells from cord blood	blood
3	chr1:173346800-173363800	Weak transcription	Aorta	Aorta
4	chr1:173347200-173375000	Weak transcription	Spleen	Spleen
5	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
6	chr1:173353200-173361000	Weak transcription	HSMM	muscle
7	chr1:173353800-173362000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:173354200-173354400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:173354200-173354600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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