Variant report

Variant	rs10403737
Chromosome Location	chr19:19529469-19529470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19527087..19529612-chr19:19530409..19532277,2	K562	blood:
2	chr19:19529159..19531727-chr19:19537866..19539888,2	K562	blood:
3	chr19:19518149..19520841-chr19:19526563..19530203,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167491	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10401822	1.00[AMR][1000 genomes]
rs10405475	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10413582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10416335	0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10417715	0.94[YRI][hapmap]
rs10421166	1.00[AMR][1000 genomes]
rs10422522	0.82[AFR][1000 genomes]
rs10423535	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13344439	0.89[AMR][1000 genomes]
rs16996031	0.89[YRI][hapmap]
rs16996042	0.94[YRI][hapmap]
rs16996102	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55927831	1.00[AMR][1000 genomes]
rs59344441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60455087	0.89[AMR][1000 genomes]
rs7248765	0.89[AFR][1000 genomes]
rs7249940	0.89[AFR][1000 genomes]
rs73922887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73922890	1.00[AMR][1000 genomes]
rs73922895	1.00[AMR][1000 genomes]
rs73922896	0.89[AMR][1000 genomes]
rs9304961	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19518600-19549800	Weak transcription	Fetal Brain Female	brain
2	chr19:19520800-19546800	Weak transcription	Hela-S3	cervix
3	chr19:19521000-19545400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:19521600-19529800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr19:19521600-19530000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr19:19521600-19531600	Weak transcription	Brain Anterior Caudate	brain
7	chr19:19521800-19529600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr19:19521800-19536200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr19:19521800-19537600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:19522000-19531800	Weak transcription	HepG2	liver
11	chr19:19522000-19545000	Weak transcription	Fetal Lung	lung
12	chr19:19522200-19529800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr19:19522200-19531800	Weak transcription	Fetal Intestine Large	intestine
14	chr19:19522200-19534600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr19:19522200-19548600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr19:19522200-19563400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr19:19522600-19533200	Weak transcription	Aorta	Aorta
18	chr19:19522600-19533600	Weak transcription	Fetal Stomach	stomach
19	chr19:19522600-19537600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr19:19522800-19529800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr19:19524200-19531600	Weak transcription	NHEK	skin
22	chr19:19525200-19531600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr19:19525400-19538200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr19:19526400-19530000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr19:19526400-19535000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr19:19526600-19530400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:19526600-19530400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr19:19526600-19530800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr19:19526600-19531800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr19:19526600-19531800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr19:19526600-19533400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr19:19526600-19533600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr19:19526800-19530200	Enhancers	Psoas Muscle	Psoas
34	chr19:19527000-19529600	Enhancers	Liver	Liver
35	chr19:19527000-19530200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr19:19527000-19530800	Enhancers	Left Ventricle	heart
37	chr19:19527000-19530800	Enhancers	Pancreas	Pancrea
38	chr19:19527000-19533200	Enhancers	Primary B cells from peripheral blood	blood
39	chr19:19527000-19534400	Enhancers	Fetal Muscle Trunk	muscle
40	chr19:19527000-19535600	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr19:19527200-19529800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:19527200-19530200	Enhancers	Adipose Nuclei	Adipose
43	chr19:19527200-19531600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr19:19527400-19530000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr19:19527400-19530000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr19:19527400-19530800	Enhancers	Fetal Thymus	thymus
47	chr19:19527400-19531800	Weak transcription	Ovary	ovary
48	chr19:19527600-19530200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr19:19527600-19533200	Enhancers	Fetal Muscle Leg	muscle
50	chr19:19527800-19529800	Enhancers	Gastric	stomach

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