Variant report

Variant	rs10413582
Chromosome Location	chr19:19544723-19544724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr19:19544693-19544908	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:19544660-19545043	HepG2	liver:	n/a	n/a
3	HNF4A	chr19:19544711-19544928	HepG2	liver:	n/a	n/a
4	YY1	chr19:19544588-19544958	HepG2	liver:	n/a	n/a
5	POLR2A	chr19:19544571-19544763	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19514840..19518062-chr19:19543803..19546421,4	K562	blood:

Variant related genes	Relation type
MIR640	TF binding region
ENSG00000167491	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10401822	1.00[AMR][1000 genomes]
rs10403737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10405475	1.00[AMR][1000 genomes]
rs10416335	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10421166	1.00[AMR][1000 genomes]
rs10422522	0.82[AFR][1000 genomes]
rs10423535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13344439	0.89[AMR][1000 genomes]
rs16996102	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55927831	1.00[AMR][1000 genomes]
rs59344441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60455087	0.89[AMR][1000 genomes]
rs7248765	0.89[AFR][1000 genomes]
rs7249940	0.89[AFR][1000 genomes]
rs73922887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73922890	1.00[AMR][1000 genomes]
rs73922895	1.00[AMR][1000 genomes]
rs73922896	0.89[AMR][1000 genomes]
rs9304961	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19518600-19549800	Weak transcription	Fetal Brain Female	brain
2	chr19:19520800-19546800	Weak transcription	Hela-S3	cervix
3	chr19:19521000-19545400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:19522000-19545000	Weak transcription	Fetal Lung	lung
5	chr19:19522200-19548600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr19:19522200-19563400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:19530000-19545400	Weak transcription	Colonic Mucosa	Colon
8	chr19:19530200-19547400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr19:19531400-19545000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr19:19532400-19545000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr19:19534800-19548400	Weak transcription	HSMM	muscle
12	chr19:19535000-19544800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr19:19535000-19545000	Weak transcription	Osteobl	bone
14	chr19:19536200-19545200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr19:19536800-19545000	Weak transcription	Aorta	Aorta
16	chr19:19536800-19545200	Weak transcription	Brain Hippocampus Middle	brain
17	chr19:19536800-19545400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:19536800-19545400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:19537000-19544800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:19537000-19545000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:19537000-19546800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:19537000-19549000	Weak transcription	Brain Germinal Matrix	brain
23	chr19:19537200-19549200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr19:19537800-19549800	Weak transcription	A549	lung
25	chr19:19538000-19546800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:19538200-19546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr19:19538200-19554800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr19:19538400-19555000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:19538400-19555200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr19:19538400-19555800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr19:19538400-19556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr19:19538400-19556800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr19:19538800-19545200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr19:19539200-19545200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr19:19539400-19545000	Weak transcription	NHLF	lung
36	chr19:19539400-19547000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr19:19539600-19545000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr19:19539600-19545600	Weak transcription	Primary B cells from cord blood	blood
39	chr19:19539600-19545600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr19:19539800-19545200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr19:19539800-19545600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr19:19539800-19555000	Weak transcription	Stomach Mucosa	stomach
43	chr19:19540000-19546800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr19:19540200-19545200	Weak transcription	Placenta	Placenta
45	chr19:19540200-19548400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr19:19540200-19555400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr19:19540200-19562600	Weak transcription	Fetal Intestine Large	intestine
48	chr19:19540400-19545600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr19:19540800-19545000	Weak transcription	HMEC	breast
50	chr19:19540800-19549000	Weak transcription	Esophagus	oesophagus

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