Variant report

Variant	rs9304961
Chromosome Location	chr19:19527190-19527191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19527087..19529612-chr19:19530409..19532277,2	K562	blood:
2	chr19:19526712..19528418-chr19:19572196..19573784,2	MCF-7	breast:
3	chr19:19518149..19520841-chr19:19526563..19530203,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10401822	0.89[AMR][1000 genomes]
rs10403737	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10405475	0.89[AMR][1000 genomes]
rs10413582	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10416335	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10421166	0.89[AMR][1000 genomes]
rs10422522	0.82[AFR][1000 genomes]
rs10423535	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10425164	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10425574	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16996102	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55927831	0.89[AMR][1000 genomes]
rs59344441	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7248765	0.89[AFR][1000 genomes]
rs7249940	0.89[AFR][1000 genomes]
rs73922887	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73922890	0.89[AMR][1000 genomes]
rs73922895	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19518600-19529400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr19:19518600-19549800	Weak transcription	Fetal Brain Female	brain
3	chr19:19518800-19528200	Weak transcription	Brain Germinal Matrix	brain
4	chr19:19520600-19529200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr19:19520800-19528000	Weak transcription	Brain Substantia Nigra	brain
6	chr19:19520800-19528800	Weak transcription	Primary B cells from cord blood	blood
7	chr19:19520800-19546800	Weak transcription	Hela-S3	cervix
8	chr19:19521000-19528200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr19:19521000-19529000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:19521000-19545400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:19521200-19527200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr19:19521200-19528000	Weak transcription	Thymus	Thymus
13	chr19:19521400-19528800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr19:19521600-19528000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr19:19521600-19528200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:19521600-19529800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr19:19521600-19530000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr19:19521600-19531600	Weak transcription	Brain Anterior Caudate	brain
19	chr19:19521800-19529600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr19:19521800-19536200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr19:19521800-19537600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr19:19522000-19527200	Weak transcription	HSMM	muscle
23	chr19:19522000-19527800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr19:19522000-19528200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr19:19522000-19528600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr19:19522000-19528600	Weak transcription	NHDF-Ad	bronchial
27	chr19:19522000-19531800	Weak transcription	HepG2	liver
28	chr19:19522000-19545000	Weak transcription	Fetal Lung	lung
29	chr19:19522200-19527800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:19522200-19528200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr19:19522200-19528600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:19522200-19529000	Weak transcription	Colonic Mucosa	Colon
33	chr19:19522200-19529000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr19:19522200-19529800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr19:19522200-19531800	Weak transcription	Fetal Intestine Large	intestine
36	chr19:19522200-19534600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr19:19522200-19548600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr19:19522200-19563400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr19:19522400-19528000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr19:19522400-19528000	Weak transcription	Placenta	Placenta
41	chr19:19522400-19528400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr19:19522400-19528800	Weak transcription	NHLF	lung
43	chr19:19522400-19529000	Weak transcription	Colon Smooth Muscle	Colon
44	chr19:19522600-19527200	Weak transcription	Adipose Nuclei	Adipose
45	chr19:19522600-19527400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr19:19522600-19527600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr19:19522600-19527800	Weak transcription	Gastric	stomach
48	chr19:19522600-19527800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:19522600-19528000	Weak transcription	Primary T cells from cord blood	blood
50	chr19:19522600-19528000	Weak transcription	Brain Hippocampus Middle	brain

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