Variant report
| Variant | rs10404991 |
|---|---|
| Chromosome Location | chr19:44818985-44818986 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:44816445..44819048-chr19:45004238..45006383,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167384 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10413396 | 1.00[EUR][1000 genomes] |
| rs1047949 | 0.96[EUR][1000 genomes] |
| rs11880913 | 1.00[EUR][1000 genomes] |
| rs1369099 | 0.98[EUR][1000 genomes] |
| rs16978840 | 0.86[EUR][1000 genomes] |
| rs1821460 | 0.98[EUR][1000 genomes] |
| rs41348950 | 0.83[EUR][1000 genomes] |
| rs58221454 | 0.91[EUR][1000 genomes] |
| rs58304140 | 0.91[EUR][1000 genomes] |
| rs59957346 | 0.96[EUR][1000 genomes] |
| rs60709409 | 0.93[EUR][1000 genomes] |
| rs61733037 | 1.00[EUR][1000 genomes] |
| rs73555122 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555124 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555150 | 0.98[EUR][1000 genomes] |
| rs73555158 | 0.98[EUR][1000 genomes] |
| rs73555162 | 1.00[EUR][1000 genomes] |
| rs73555165 | 1.00[EUR][1000 genomes] |
| rs73555168 | 1.00[EUR][1000 genomes] |
| rs73555173 | 1.00[EUR][1000 genomes] |
| rs73555177 | 1.00[EUR][1000 genomes] |
| rs73555189 | 0.93[EUR][1000 genomes] |
| rs73555197 | 0.93[EUR][1000 genomes] |
| rs73555200 | 0.93[EUR][1000 genomes] |
| rs73556914 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3318935 | chr19:44813543-44819319 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3318936 | chr19:44813543-44819319 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3330033 | chr19:44813552-44819322 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:44814600-44824600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 2 | chr19:44818000-44819000 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
