Variant report

Variant	rs59957346
Chromosome Location	chr19:44845190-44845191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44840012..44842382-chr19:44842784..44845287,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10404991	0.96[EUR][1000 genomes]
rs10413396	0.96[EUR][1000 genomes]
rs1047949	1.00[EUR][1000 genomes]
rs11880913	0.96[EUR][1000 genomes]
rs1369099	0.95[EUR][1000 genomes]
rs16978840	0.89[EUR][1000 genomes]
rs1821460	0.95[EUR][1000 genomes]
rs41348950	0.86[EUR][1000 genomes]
rs58221454	0.91[EUR][1000 genomes]
rs58304140	0.91[EUR][1000 genomes]
rs60709409	0.96[EUR][1000 genomes]
rs61733037	0.96[EUR][1000 genomes]
rs73555122	0.96[EUR][1000 genomes]
rs73555124	0.96[EUR][1000 genomes]
rs73555150	0.95[EUR][1000 genomes]
rs73555158	0.95[EUR][1000 genomes]
rs73555162	0.96[EUR][1000 genomes]
rs73555165	0.96[EUR][1000 genomes]
rs73555168	0.96[EUR][1000 genomes]
rs73555173	0.96[EUR][1000 genomes]
rs73555177	0.96[EUR][1000 genomes]
rs73555189	0.93[EUR][1000 genomes]
rs73555197	0.93[EUR][1000 genomes]
rs73555200	0.93[EUR][1000 genomes]
rs73556914	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
5	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
6	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:44830600-44845200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr19:44830800-44845600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:44830800-44850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:44831600-44846600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:44831800-44846400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:44832000-44845600	Weak transcription	Hela-S3	cervix
15	chr19:44832000-44848200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr19:44837400-44845200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
17	chr19:44837400-44851000	ZNF genes & repeats	Ovary	ovary
18	chr19:44839400-44845200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr19:44839400-44845600	Weak transcription	Stomach Mucosa	stomach
20	chr19:44839800-44846400	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr19:44840000-44845400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr19:44840400-44845200	Strong transcription	HSMM	muscle
23	chr19:44840400-44846200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr19:44840800-44845400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr19:44840800-44846200	Strong transcription	Brain Angular Gyrus	brain
26	chr19:44840800-44860000	Weak transcription	NHDF-Ad	bronchial
27	chr19:44841000-44847400	Weak transcription	Primary B cells from cord blood	blood
28	chr19:44841200-44846400	Weak transcription	NHLF	lung
29	chr19:44841200-44847000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:44841800-44846600	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr19:44842200-44845200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr19:44842200-44846200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr19:44842200-44846200	ZNF genes & repeats	Aorta	Aorta
34	chr19:44842400-44845200	Strong transcription	Brain Hippocampus Middle	brain
35	chr19:44842400-44845200	Strong transcription	Pancreas	Pancrea
36	chr19:44842400-44846400	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr19:44842600-44845200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr19:44842600-44845200	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr19:44842800-44845200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr19:44842800-44845400	Weak transcription	Psoas Muscle	Psoas
41	chr19:44842800-44850200	Weak transcription	Fetal Heart	heart
42	chr19:44843000-44846200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr19:44843000-44848800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr19:44843200-44845200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr19:44843400-44845200	ZNF genes & repeats	Esophagus	oesophagus
46	chr19:44843400-44845200	ZNF genes & repeats	Lung	lung
47	chr19:44843400-44845400	ZNF genes & repeats	Brain Germinal Matrix	brain
48	chr19:44843400-44846600	ZNF genes & repeats	Fetal Kidney	kidney
49	chr19:44843800-44846600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr19:44844000-44845200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links