Variant report
| Variant | rs10413396 |
|---|---|
| Chromosome Location | chr19:44813702-44813703 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr19:44813690-44813862 | Hela-S3 | cervix: | n/a | chr19:44813790-44813805 |
| 2 | MAFK | chr19:44813538-44813963 | HepG2 | liver: | n/a | chr19:44813790-44813805 |
| 3 | MAFF | chr19:44813560-44813952 | HepG2 | liver: | n/a | n/a |
| 4 | MAFK | chr19:44813578-44813958 | HepG2 | liver: | n/a | chr19:44813790-44813805 |
| 5 | MAFK | chr19:44813621-44813924 | IMR90 | lung: | n/a | chr19:44813790-44813805 |
| 6 | MAFF | chr19:44813616-44813922 | K562 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:44739640..44742432-chr19:44813683..44816580,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ZNF235 | TF binding region |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10404991 | 1.00[EUR][1000 genomes] |
| rs1047949 | 0.96[EUR][1000 genomes] |
| rs11880913 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1369099 | 0.98[EUR][1000 genomes] |
| rs16978732 | 0.82[CEU][hapmap] |
| rs16978840 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1821460 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs41348950 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs41360748 | 0.82[CEU][hapmap] |
| rs58221454 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs58304140 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs59957346 | 0.96[EUR][1000 genomes] |
| rs60709409 | 0.93[EUR][1000 genomes] |
| rs61733037 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7249904 | 0.82[CEU][hapmap] |
| rs73555122 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555124 | 1.00[EUR][1000 genomes] |
| rs73555150 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73555158 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73555162 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555165 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555168 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555173 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555177 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73555189 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73555197 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73555200 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73556914 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3318935 | chr19:44813543-44819319 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3318936 | chr19:44813543-44819319 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3330033 | chr19:44813552-44819322 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:44813400-44814200 | Enhancers | HSMMtube | muscle |
