Variant report

Variant	rs1047949
Chromosome Location	chr19:44831166-44831167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44830119..44832268-chr19:44837781..44840582,2	K562	blood:
2	chr19:44807899..44809893-chr19:44829834..44832203,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159917	Chromatin interaction

rs_ID	r²[population]
rs10404991	0.96[EUR][1000 genomes]
rs10413396	0.96[EUR][1000 genomes]
rs11880913	0.96[EUR][1000 genomes]
rs1369099	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16978840	0.89[EUR][1000 genomes]
rs1821460	0.95[EUR][1000 genomes]
rs41348950	0.86[EUR][1000 genomes]
rs58221454	0.91[EUR][1000 genomes]
rs58304140	0.91[EUR][1000 genomes]
rs59957346	1.00[EUR][1000 genomes]
rs60709409	0.96[EUR][1000 genomes]
rs61733037	0.96[EUR][1000 genomes]
rs73555122	0.96[EUR][1000 genomes]
rs73555124	0.96[EUR][1000 genomes]
rs73555150	0.95[EUR][1000 genomes]
rs73555158	0.95[EUR][1000 genomes]
rs73555162	0.96[EUR][1000 genomes]
rs73555165	0.96[EUR][1000 genomes]
rs73555168	0.96[EUR][1000 genomes]
rs73555173	0.96[EUR][1000 genomes]
rs73555177	0.96[EUR][1000 genomes]
rs73555189	0.93[EUR][1000 genomes]
rs73555197	0.93[EUR][1000 genomes]
rs73555200	0.93[EUR][1000 genomes]
rs73556914	0.93[EUR][1000 genomes]

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44824800-44841000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44825800-44831800	Weak transcription	Right Ventricle	heart
5	chr19:44827400-44831200	Weak transcription	Brain Angular Gyrus	brain
6	chr19:44827800-44832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:44828000-44845000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr19:44828200-44831600	Weak transcription	NH-A	brain
9	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr19:44828600-44832800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr19:44828600-44844200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
13	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
14	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr19:44828800-44831200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:44828800-44842600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:44829000-44831600	Weak transcription	HSMMtube	muscle
20	chr19:44829000-44831800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:44829000-44832400	Weak transcription	Fetal Heart	heart
22	chr19:44829000-44844000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:44829200-44831200	Weak transcription	NHDF-Ad	bronchial
24	chr19:44829200-44831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr19:44829200-44831600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:44829200-44831600	Weak transcription	Brain Anterior Caudate	brain
27	chr19:44829200-44831600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr19:44829200-44831600	Weak transcription	Placenta	Placenta
29	chr19:44829200-44831600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr19:44829200-44831800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:44829200-44831800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:44829200-44831800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr19:44829200-44831800	Weak transcription	Fetal Stomach	stomach
34	chr19:44829200-44841200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr19:44829400-44831200	Weak transcription	Psoas Muscle	Psoas
36	chr19:44829400-44831600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr19:44829400-44831600	Weak transcription	Lung	lung
38	chr19:44829400-44831600	Weak transcription	Spleen	Spleen
39	chr19:44829400-44831600	Weak transcription	HSMM	muscle
40	chr19:44829400-44831800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:44829400-44831800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr19:44829600-44831600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr19:44829600-44831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr19:44829800-44831200	Weak transcription	Ovary	ovary
45	chr19:44829800-44831600	Weak transcription	Left Ventricle	heart
46	chr19:44829800-44831600	Weak transcription	Pancreas	Pancrea
47	chr19:44829800-44831800	Weak transcription	HMEC	breast
48	chr19:44829800-44831800	Weak transcription	Osteobl	bone
49	chr19:44830000-44831200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:44830200-44831800	Weak transcription	HUVEC	blood vessel

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