Variant report

Variant	rs10405802
Chromosome Location	chr19:55924987-55924988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:55806232..55808402-chr19:55924018..55926103,2	MCF-7	breast:
2	chr19:55923277..55927988-chr19:55928372..55932935,4	K562	blood:
3	chr19:55918058..55921569-chr19:55922742..55926657,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108106	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10403564	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10403989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10407066	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408088	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10410269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10415365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10416908	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10420818	0.91[AFR][1000 genomes]
rs10421889	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10423589	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10424289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10424652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425107	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425596	0.80[AFR][1000 genomes]
rs28408730	0.91[AFR][1000 genomes]
rs28536711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28540780	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28797308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59698058	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61468173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617871	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617888	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619606	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619611	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619651	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065760	chr19:55721521-55929740	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
2	nsv912456	chr19:55725410-55925500	Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
3	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
4	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
5	nsv912462	chr19:55845386-55925500	Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
6	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
7	nsv912465	chr19:55854313-55935184	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
8	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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