Variant report

Variant	rs10415365
Chromosome Location	chr19:55920922-55920923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:55768444..55771983-chr19:55917721..55920953,5	K562	blood:
2	chr19:55849530..55854944-chr19:55915448..55920939,7	K562	blood:
3	chr19:55917609..55921205-chr19:55953986..55957164,3	MCF-7	breast:
4	chr19:55916632..55921194-chr19:56143912..56146949,5	K562	blood:
5	chr19:55915948..55921315-chr19:55958410..55968133,14	K562	blood:
6	chr19:55627278..55631711-chr19:55917816..55921434,6	K562	blood:
7	chr19:55915902..55921022-chr19:55996597..56001074,7	K562	blood:
8	chr19:55789007..55793013-chr19:55917737..55920988,5	K562	blood:
9	chr19:55811395..55814060-chr19:55915860..55921148,5	MCF-7	breast:
10	chr19:55590507..55594768-chr19:55917232..55920967,4	K562	blood:
11	chr19:55918951..55921734-chr19:55969699..55972371,2	MCF-7	breast:
12	chr19:55918880..55921412-chr19:56134337..56137770,3	MCF-7	breast:
13	chr19:55916982..55920956-chr19:55971330..55975217,7	K562	blood:
14	chr19:55814995..55818347-chr19:55916195..55920993,4	K562	blood:
15	chr19:55765021..55768327-chr19:55917514..55921278,5	K562	blood:
16	chr19:55919863..55921511-chr19:55964348..55967159,3	MCF-7	breast:
17	chr19:55919733..55921387-chr19:56135059..56137658,2	K562	blood:
18	chr19:55919243..55921969-chr19:56150138..56152279,2	K562	blood:
19	chr19:55725879..55730013-chr19:55916052..55921296,12	K562	blood:
20	chr19:55919210..55922859-chr19:55979173..55982922,4	K562	blood:
21	chr19:55917160..55921382-chr19:55952217..55958073,12	K562	blood:
22	chr19:55789007..55794976-chr19:55917716..55921043,9	K562	blood:
23	chr19:55916326..55922315-chr19:55969733..55974780,9	MCF-7	breast:
24	chr19:55669904..55673815-chr19:55917688..55921815,5	K562	blood:
25	chr19:55666595..55669878-chr19:55917801..55921094,4	K562	blood:
26	chr19:55917719..55921194-chr19:56143842..56149725,7	K562	blood:
27	chr19:55917779..55921316-chr19:55986159..55990812,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL28-1	chr19:55920919-55921300	NONHSAT068035

No data

Variant related genes	Relation type
ENSG00000167646	Chromatin interaction
ENSG00000269859	Chromatin interaction
ENSG00000267649	Chromatin interaction
ENSG00000133265	Chromatin interaction
ENSG00000179954	Chromatin interaction
ENSG00000267577	Chromatin interaction
ENSG00000197483	Chromatin interaction
ENSG00000267110	Chromatin interaction
ENSG00000090971	Chromatin interaction
ENSG00000160469	Chromatin interaction
ENSG00000267531	Chromatin interaction
ENSG00000125503	Chromatin interaction
ENSG00000171425	Chromatin interaction
ENSG00000213015	Chromatin interaction
ENSG00000187902	Chromatin interaction
ENSG00000133247	Chromatin interaction
ENSG00000063241	Chromatin interaction
ENSG00000131037	Chromatin interaction
ENSG00000105063	Chromatin interaction
ENSG00000129991	Chromatin interaction
ENSG00000179922	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10403564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10403989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10405802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10407066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10410269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10411984	0.83[AFR][1000 genomes]
rs10416908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10420818	0.95[AFR][1000 genomes]
rs10421889	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10423589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10424289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10424652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425596	0.83[AFR][1000 genomes]
rs28408730	0.95[AFR][1000 genomes]
rs28536711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28540780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28797308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59698058	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61468173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617896	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73619651	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065760	chr19:55721521-55929740	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
2	nsv912456	chr19:55725410-55925500	Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
3	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
4	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
5	nsv912462	chr19:55845386-55925500	Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
6	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
7	nsv912464	chr19:55850269-55921164	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
8	nsv912465	chr19:55854313-55935184	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
9	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55920000-55922200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:55920200-55922200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr19:55920400-55924200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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