Variant report

Variant	rs10407493
Chromosome Location	chr5:74429459-74429460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10401640	1.00[EUR][1000 genomes]
rs10402596	1.00[EUR][1000 genomes]
rs10402641	1.00[EUR][1000 genomes]
rs10402996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403917	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405060	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406600	1.00[EUR][1000 genomes]
rs10406619	1.00[EUR][1000 genomes]
rs10406818	1.00[EUR][1000 genomes]
rs10407027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407064	1.00[EUR][1000 genomes]
rs10407391	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408329	1.00[EUR][1000 genomes]
rs10408400	1.00[EUR][1000 genomes]
rs10409320	1.00[EUR][1000 genomes]
rs10409415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409699	1.00[EUR][1000 genomes]
rs10411057	1.00[EUR][1000 genomes]
rs10411164	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10411967	1.00[EUR][1000 genomes]
rs10412319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417369	1.00[EUR][1000 genomes]
rs10417976	1.00[EUR][1000 genomes]
rs10418747	1.00[EUR][1000 genomes]
rs10420150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422702	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423326	1.00[EUR][1000 genomes]
rs10423379	1.00[EUR][1000 genomes]
rs10423824	1.00[EUR][1000 genomes]
rs10423908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424023	1.00[EUR][1000 genomes]
rs10425119	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10426588	1.00[EUR][1000 genomes]
rs11879250	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11881268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12104420	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13344152	1.00[EUR][1000 genomes]
rs13345507	1.00[EUR][1000 genomes]
rs13346124	1.00[EUR][1000 genomes]
rs13346929	1.00[EUR][1000 genomes]
rs13347048	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13347077	1.00[EUR][1000 genomes]
rs13347114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107463	1.00[EUR][1000 genomes]
rs28374173	1.00[EUR][1000 genomes]
rs28374334	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418559	1.00[EUR][1000 genomes]
rs28463867	1.00[AMR][1000 genomes]
rs28546375	1.00[EUR][1000 genomes]
rs28583453	1.00[EUR][1000 genomes]
rs28673196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28696857	0.85[AFR][1000 genomes]
rs28697869	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702564	1.00[EUR][1000 genomes]
rs28832085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56705946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59841198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60019746	1.00[EUR][1000 genomes]
rs60726102	1.00[EUR][1000 genomes]
rs61138646	1.00[EUR][1000 genomes]
rs61224275	1.00[EUR][1000 genomes]
rs61286815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61442953	1.00[EUR][1000 genomes]
rs73547154	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547155	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8110425	1.00[EUR][1000 genomes]
rs9304611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links