The 2.0 version of rSNPBase

Variant report

Variant rs10408909
Chromosome Location chr19:38634973-38634974
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38591800-38642800 Weak transcription Small Intestine intestine
2 chr19:38600600-38652800 Weak transcription NHDF-Ad bronchial
3 chr19:38610800-38643600 Weak transcription HepG2 liver
4 chr19:38611000-38652800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr19:38611600-38641400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr19:38611600-38653000 Weak transcription HUVEC blood vessel
7 chr19:38611800-38642600 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr19:38611800-38653000 Weak transcription Fetal Kidney kidney
9 chr19:38613800-38635600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr19:38613800-38636600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr19:38613800-38639000 Weak transcription Left Ventricle heart
12 chr19:38613800-38641800 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr19:38613800-38643200 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr19:38613800-38652200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr19:38613800-38652600 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr19:38616000-38652600 Strong transcription Primary B cells from peripheral blood blood
17 chr19:38616200-38641600 Weak transcription H9 Cell Line embryonic stem cell
18 chr19:38616600-38642000 Weak transcription Dnd41 blood
19 chr19:38617000-38652000 Strong transcription Fetal Intestine Small intestine
20 chr19:38618200-38651000 Strong transcription Fetal Intestine Large intestine
21 chr19:38619600-38647800 Strong transcription Fetal Stomach stomach
22 chr19:38621600-38642800 Weak transcription NHLF lung
23 chr19:38622200-38636800 Weak transcription Brain Anterior Caudate brain
24 chr19:38622600-38641800 Weak transcription Aorta Aorta
25 chr19:38623000-38635200 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr19:38623000-38642800 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr19:38624400-38652400 Weak transcription Fetal Thymus thymus
28 chr19:38626000-38643400 Weak transcription Placenta Placenta
29 chr19:38626400-38635200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr19:38626400-38642000 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr19:38626400-38643400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr19:38626400-38652200 Strong transcription A549 lung
33 chr19:38626600-38635600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr19:38626600-38641000 Weak transcription Hela-S3 cervix
35 chr19:38626600-38643600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr19:38626800-38635600 Weak transcription NHEK skin
37 chr19:38626800-38646000 Weak transcription HMEC breast
38 chr19:38627000-38652400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr19:38627600-38642800 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr19:38628400-38652600 Weak transcription Right Atrium heart
41 chr19:38628600-38645000 Strong transcription Sigmoid Colon Sigmoid Colon
42 chr19:38628800-38636600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr19:38628800-38637800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr19:38628800-38645200 Strong transcription Duodenum Mucosa Duodenum
45 chr19:38628800-38646400 Strong transcription Rectal Mucosa Donor 29 rectum
46 chr19:38628800-38651200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr19:38629200-38652600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
48 chr19:38629600-38651600 Strong transcription GM12878-XiMat blood
49 chr19:38629800-38636800 Strong transcription Lung lung
50 chr19:38630000-38635600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015