Variant report

Variant	rs10405381
Chromosome Location	chr19:38609786-38609787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10401829	1.00[AMR][1000 genomes]
rs10401835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10402883	1.00[AMR][1000 genomes]
rs10403595	0.89[AFR][1000 genomes]
rs10403809	1.00[AMR][1000 genomes]
rs10404447	1.00[EUR][1000 genomes]
rs10405162	1.00[EUR][1000 genomes]
rs10406765	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407370	1.00[EUR][1000 genomes]
rs10407806	1.00[EUR][1000 genomes]
rs10408169	1.00[EUR][1000 genomes]
rs10408479	1.00[AMR][1000 genomes]
rs10408909	1.00[AMR][1000 genomes]
rs10410961	1.00[EUR][1000 genomes]
rs10412116	1.00[AMR][1000 genomes]
rs10413138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10413363	1.00[AMR][1000 genomes]
rs10413551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10413596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10413865	1.00[EUR][1000 genomes]
rs10414605	1.00[EUR][1000 genomes]
rs10414916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10414927	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415289	1.00[EUR][1000 genomes]
rs10415809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419299	1.00[EUR][1000 genomes]
rs10419700	1.00[EUR][1000 genomes]
rs10419708	1.00[EUR][1000 genomes]
rs10419753	1.00[EUR][1000 genomes]
rs10420885	1.00[EUR][1000 genomes]
rs10421241	1.00[AMR][1000 genomes]
rs10423429	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424104	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424626	1.00[EUR][1000 genomes]
rs10424818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10426292	1.00[AMR][1000 genomes]
rs10426458	1.00[AMR][1000 genomes]
rs13343460	1.00[EUR][1000 genomes]
rs28376501	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28380555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28516776	1.00[EUR][1000 genomes]
rs28540039	1.00[EUR][1000 genomes]
rs28625002	1.00[EUR][1000 genomes]
rs28627637	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649033	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28660098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28700884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56134404	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56216562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58260561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59501312	1.00[EUR][1000 genomes]
rs59571293	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61456950	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71354969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73630898	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73632925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73632930	0.93[AFR][1000 genomes]
rs73930357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73930389	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38551200-38613800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr19:38573600-38610000	Strong transcription	Fetal Intestine Large	intestine
3	chr19:38581600-38610000	Weak transcription	Psoas Muscle	Psoas
4	chr19:38587200-38613600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr19:38587400-38613400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr19:38590200-38611000	Strong transcription	Duodenum Smooth Muscle	Duodenum
7	chr19:38590400-38609800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr19:38591800-38642800	Weak transcription	Small Intestine	intestine
9	chr19:38596000-38610000	Strong transcription	Fetal Muscle Leg	muscle
10	chr19:38596000-38613800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:38597800-38610200	Weak transcription	HUVEC	blood vessel
12	chr19:38597800-38611800	Strong transcription	Osteobl	bone
13	chr19:38597800-38612000	Strong transcription	HSMM	muscle
14	chr19:38598000-38610200	Strong transcription	A549	lung
15	chr19:38598200-38611800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:38600600-38652800	Weak transcription	NHDF-Ad	bronchial
17	chr19:38602800-38612800	Weak transcription	Hela-S3	cervix
18	chr19:38603000-38609800	Weak transcription	Stomach Mucosa	stomach
19	chr19:38603000-38609800	Weak transcription	NHLF	lung
20	chr19:38603000-38610000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr19:38603000-38610000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr19:38603000-38610000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr19:38603000-38610000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr19:38603000-38610000	Weak transcription	Brain Anterior Caudate	brain
25	chr19:38603000-38610000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr19:38603000-38610000	Weak transcription	Esophagus	oesophagus
27	chr19:38603000-38610000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr19:38603000-38611200	Weak transcription	Fetal Brain Male	brain
29	chr19:38603000-38625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr19:38603200-38610000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr19:38603200-38610000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr19:38603200-38610000	Weak transcription	Brain Substantia Nigra	brain
33	chr19:38603200-38610200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:38603200-38610200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr19:38603200-38610400	Weak transcription	NH-A	brain
36	chr19:38603200-38611200	Weak transcription	Fetal Heart	heart
37	chr19:38603400-38610200	Weak transcription	Placenta	Placenta
38	chr19:38603800-38609800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr19:38604000-38613400	Strong transcription	Primary B cells from cord blood	blood
40	chr19:38604200-38609800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr19:38604200-38610000	Weak transcription	Brain Angular Gyrus	brain
42	chr19:38604400-38609800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr19:38604600-38609800	Weak transcription	Colon Smooth Muscle	Colon
44	chr19:38604600-38610000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr19:38605800-38609800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr19:38605800-38609800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr19:38605800-38625400	Weak transcription	HMEC	breast
48	chr19:38606000-38609800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr19:38606000-38610000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr19:38606000-38610200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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