Variant report

Variant	rs10424626
Chromosome Location	chr19:38492992-38492993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38483729..38485746-chr19:38492627..38494202,2	MCF-7	breast:
2	chr19:38486249..38487777-chr19:38491320..38494076,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10401835	1.00[EUR][1000 genomes]
rs10404447	1.00[EUR][1000 genomes]
rs10405162	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405381	1.00[EUR][1000 genomes]
rs10406765	1.00[EUR][1000 genomes]
rs10407169	1.00[EUR][1000 genomes]
rs10407230	1.00[EUR][1000 genomes]
rs10407370	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10407806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10410961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10413138	1.00[EUR][1000 genomes]
rs10413551	1.00[EUR][1000 genomes]
rs10413596	1.00[EUR][1000 genomes]
rs10413865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10414605	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10414916	1.00[EUR][1000 genomes]
rs10414927	1.00[EUR][1000 genomes]
rs10415289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415809	1.00[EUR][1000 genomes]
rs10418855	1.00[AMR][1000 genomes]
rs10419299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10420885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423429	1.00[EUR][1000 genomes]
rs10424104	1.00[EUR][1000 genomes]
rs10424818	1.00[EUR][1000 genomes]
rs10425099	1.00[EUR][1000 genomes]
rs10425571	1.00[EUR][1000 genomes]
rs13343460	1.00[EUR][1000 genomes]
rs28376501	1.00[EUR][1000 genomes]
rs28380555	1.00[EUR][1000 genomes]
rs28421402	1.00[EUR][1000 genomes]
rs28516776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28540039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28625002	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627637	1.00[EUR][1000 genomes]
rs28637743	1.00[EUR][1000 genomes]
rs28649033	1.00[EUR][1000 genomes]
rs28660098	1.00[EUR][1000 genomes]
rs28700884	1.00[EUR][1000 genomes]
rs56134404	1.00[EUR][1000 genomes]
rs56216562	1.00[EUR][1000 genomes]
rs58260561	1.00[EUR][1000 genomes]
rs59501312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59571293	1.00[EUR][1000 genomes]
rs61456950	1.00[EUR][1000 genomes]
rs71354969	1.00[EUR][1000 genomes]
rs73630898	1.00[EUR][1000 genomes]
rs73632925	1.00[EUR][1000 genomes]
rs73930357	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38461600-38493600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:38461600-38493600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr19:38470800-38494000	Weak transcription	Right Ventricle	heart
4	chr19:38471200-38493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr19:38472400-38493800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:38474800-38513600	Weak transcription	Gastric	stomach
7	chr19:38477600-38493800	Weak transcription	Thymus	Thymus
8	chr19:38479200-38493800	Weak transcription	Colonic Mucosa	Colon
9	chr19:38480000-38493600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:38480000-38493600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr19:38480000-38493800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr19:38481000-38493800	Weak transcription	Small Intestine	intestine
13	chr19:38482200-38493800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr19:38482400-38493600	Weak transcription	Brain Hippocampus Middle	brain
15	chr19:38482400-38493800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:38482400-38493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr19:38482600-38493800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr19:38482600-38494000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr19:38482600-38494000	Weak transcription	Esophagus	oesophagus
20	chr19:38482800-38493000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr19:38482800-38493400	Weak transcription	Stomach Mucosa	stomach
22	chr19:38483000-38493600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr19:38483800-38493600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr19:38484600-38493800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr19:38485600-38493600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr19:38485600-38493800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:38485800-38493600	Weak transcription	Lung	lung
28	chr19:38485800-38493800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr19:38485800-38496000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr19:38486400-38493800	Weak transcription	Fetal Intestine Large	intestine
31	chr19:38488400-38493800	Enhancers	Primary B cells from peripheral blood	blood
32	chr19:38488800-38493600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr19:38489000-38493600	Weak transcription	Brain Angular Gyrus	brain
34	chr19:38489000-38493800	Weak transcription	Brain Anterior Caudate	brain
35	chr19:38489000-38493800	Weak transcription	Colon Smooth Muscle	Colon
36	chr19:38489200-38493800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr19:38490200-38493800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr19:38490200-38493800	Enhancers	HUVEC	blood vessel
39	chr19:38490400-38493400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr19:38490400-38493400	Weak transcription	Fetal Stomach	stomach
41	chr19:38490400-38493400	Weak transcription	Pancreas	Pancrea
42	chr19:38490400-38493400	Weak transcription	Psoas Muscle	Psoas
43	chr19:38490400-38493800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr19:38490400-38493800	Weak transcription	Brain Substantia Nigra	brain
45	chr19:38490400-38493800	Weak transcription	Right Atrium	heart
46	chr19:38490400-38495800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr19:38490600-38493400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr19:38490600-38493600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr19:38490600-38493600	Weak transcription	Left Ventricle	heart
50	chr19:38490600-38493600	Weak transcription	Ovary	ovary

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