Variant report

Variant	rs10419708
Chromosome Location	chr19:38508668-38508669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38508262..38510811-chr19:38514830..38516559,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10401835	1.00[EUR][1000 genomes]
rs10404447	1.00[EUR][1000 genomes]
rs10405162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405381	1.00[EUR][1000 genomes]
rs10406765	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs10407169	1.00[EUR][1000 genomes]
rs10407230	1.00[EUR][1000 genomes]
rs10407370	1.00[EUR][1000 genomes]
rs10407806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10408169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10410961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10413138	1.00[EUR][1000 genomes]
rs10413551	1.00[EUR][1000 genomes]
rs10413596	1.00[EUR][1000 genomes]
rs10413865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10414605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10414916	1.00[EUR][1000 genomes]
rs10414927	1.00[EUR][1000 genomes]
rs10415289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415809	1.00[EUR][1000 genomes]
rs10418855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10419299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10419700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10420885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423429	1.00[EUR][1000 genomes]
rs10424104	1.00[EUR][1000 genomes]
rs10424626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424818	1.00[EUR][1000 genomes]
rs10425099	1.00[EUR][1000 genomes]
rs10425571	1.00[EUR][1000 genomes]
rs13343460	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs28376501	1.00[EUR][1000 genomes]
rs28380555	1.00[EUR][1000 genomes]
rs28421402	1.00[EUR][1000 genomes]
rs28516776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28540039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28625002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627637	1.00[EUR][1000 genomes]
rs28637743	1.00[EUR][1000 genomes]
rs28649033	1.00[EUR][1000 genomes]
rs28660098	1.00[EUR][1000 genomes]
rs28700884	1.00[EUR][1000 genomes]
rs56134404	1.00[EUR][1000 genomes]
rs56216562	1.00[EUR][1000 genomes]
rs58260561	1.00[EUR][1000 genomes]
rs59501312	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59571293	1.00[EUR][1000 genomes]
rs61456950	1.00[EUR][1000 genomes]
rs71354969	1.00[EUR][1000 genomes]
rs73630898	1.00[EUR][1000 genomes]
rs73632925	1.00[EUR][1000 genomes]
rs73930357	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv911656	chr19:38505037-38539988	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38474800-38513600	Weak transcription	Gastric	stomach
2	chr19:38495400-38522800	Weak transcription	Aorta	Aorta
3	chr19:38495400-38526400	Weak transcription	Ovary	ovary
4	chr19:38495600-38509200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr19:38495600-38512800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr19:38495600-38513400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr19:38495600-38514200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr19:38495800-38510000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr19:38495800-38513400	Weak transcription	Stomach Mucosa	stomach
10	chr19:38496200-38509400	Weak transcription	HSMMtube	muscle
11	chr19:38496200-38512600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:38496200-38513600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr19:38496200-38513600	Weak transcription	Left Ventricle	heart
14	chr19:38496200-38513600	Weak transcription	Right Ventricle	heart
15	chr19:38496200-38513600	Weak transcription	NHEK	skin
16	chr19:38496200-38521400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr19:38496400-38510800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:38496400-38511000	Weak transcription	Brain Germinal Matrix	brain
19	chr19:38496400-38521400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr19:38496600-38513600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr19:38496600-38515600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr19:38496800-38509400	Weak transcription	HUVEC	blood vessel
23	chr19:38496800-38520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:38497000-38513400	Weak transcription	NHLF	lung
25	chr19:38497400-38511800	Weak transcription	NH-A	brain
26	chr19:38497400-38515800	Weak transcription	Fetal Brain Male	brain
27	chr19:38497400-38520600	Weak transcription	Primary T cells from cord blood	blood
28	chr19:38497600-38513600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr19:38498200-38514800	Weak transcription	HepG2	liver
30	chr19:38500600-38524200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr19:38501000-38521400	Weak transcription	Thymus	Thymus
32	chr19:38501800-38511000	Weak transcription	HSMM	muscle
33	chr19:38502400-38523000	Weak transcription	Liver	Liver
34	chr19:38502600-38512600	Weak transcription	Pancreas	Pancrea
35	chr19:38503000-38511000	Weak transcription	Spleen	Spleen
36	chr19:38503600-38513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr19:38503800-38509800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr19:38503800-38509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr19:38503800-38509800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr19:38503800-38509800	Weak transcription	Lung	lung
41	chr19:38503800-38511000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr19:38503800-38511600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:38503800-38513400	Weak transcription	Esophagus	oesophagus
44	chr19:38503800-38513400	Weak transcription	Fetal Intestine Large	intestine
45	chr19:38503800-38523800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:38504000-38510200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr19:38504000-38513200	Strong transcription	Fetal Intestine Small	intestine
48	chr19:38504000-38515200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr19:38504000-38515200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr19:38504400-38512600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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