Variant report

Variant	rs10428551
Chromosome Location	chr5:89119504-89119505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11949880	1.00[EUR][1000 genomes]
rs12109697	1.00[EUR][1000 genomes]
rs6452856	1.00[EUR][1000 genomes]
rs6872445	1.00[EUR][1000 genomes]
rs6883343	1.00[EUR][1000 genomes]
rs73180667	1.00[EUR][1000 genomes]
rs73180668	1.00[EUR][1000 genomes]
rs73182633	1.00[EUR][1000 genomes]
rs73182634	1.00[EUR][1000 genomes]
rs73186550	1.00[EUR][1000 genomes]
rs73770752	1.00[EUR][1000 genomes]
rs73770758	1.00[EUR][1000 genomes]
rs73770765	1.00[EUR][1000 genomes]
rs7709100	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830390	chr5:89054602-89236583	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89108600-89123000	Weak transcription	Aorta	Aorta
2	chr5:89118000-89120800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:89118200-89120400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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