Variant report

Variant	rs73182633
Chromosome Location	chr5:89017443-89017444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10428551	1.00[EUR][1000 genomes]
rs11949880	1.00[EUR][1000 genomes]
rs12109697	1.00[EUR][1000 genomes]
rs13354364	1.00[EUR][1000 genomes]
rs13357683	1.00[EUR][1000 genomes]
rs6452856	1.00[EUR][1000 genomes]
rs6872445	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6877903	1.00[EUR][1000 genomes]
rs6889960	1.00[EUR][1000 genomes]
rs73180667	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73180668	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73182634	1.00[EUR][1000 genomes]
rs73186550	1.00[EUR][1000 genomes]
rs73770752	1.00[EUR][1000 genomes]
rs73770758	1.00[EUR][1000 genomes]
rs73770765	1.00[EUR][1000 genomes]
rs7709100	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89017000-89017800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:89017400-89018600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:89017400-89019200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:89017400-89019400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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