Variant report

Variant	rs73182634
Chromosome Location	chr5:89024288-89024289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10428551	1.00[EUR][1000 genomes]
rs11949880	1.00[EUR][1000 genomes]
rs12109697	1.00[EUR][1000 genomes]
rs13354364	1.00[EUR][1000 genomes]
rs13357683	1.00[EUR][1000 genomes]
rs6452856	1.00[EUR][1000 genomes]
rs6872445	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6877903	1.00[EUR][1000 genomes]
rs6889960	1.00[EUR][1000 genomes]
rs73180667	1.00[EUR][1000 genomes]
rs73180668	1.00[EUR][1000 genomes]
rs73182633	1.00[EUR][1000 genomes]
rs73186550	1.00[EUR][1000 genomes]
rs73770752	1.00[EUR][1000 genomes]
rs73770758	1.00[EUR][1000 genomes]
rs73770765	1.00[EUR][1000 genomes]
rs7709100	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89019200-89024800	Weak transcription	HSMMtube	muscle
2	chr5:89019600-89024600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:89020200-89024400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:89020400-89024600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:89020400-89024600	Weak transcription	HSMM	muscle
6	chr5:89023600-89024400	Enhancers	Psoas Muscle	Psoas
7	chr5:89023600-89025000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:89023600-89025200	Enhancers	Fetal Lung	lung
9	chr5:89023800-89024800	Enhancers	Fetal Brain Female	brain
10	chr5:89023800-89026000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:89023800-89026200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr5:89024000-89024400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:89024000-89024800	Enhancers	Right Ventricle	heart
14	chr5:89024000-89025000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:89024000-89025200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:89024000-89025400	Enhancers	Fetal Brain Male	brain
17	chr5:89024000-89026200	Enhancers	Primary B cells from peripheral blood	blood
18	chr5:89024200-89024400	Enhancers	Aorta	Aorta
19	chr5:89024200-89024600	Enhancers	GM12878-XiMat	blood
20	chr5:89024200-89024800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:89024200-89024800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:89024200-89024800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:89024200-89024800	Active TSS	Brain Anterior Caudate	brain
24	chr5:89024200-89025200	Enhancers	Brain Germinal Matrix	brain
25	chr5:89024200-89025800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:89024200-89025800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr5:89024200-89026000	Enhancers	Adipose Nuclei	Adipose
28	chr5:89024200-89026000	Enhancers	Osteobl	bone
29	chr5:89024200-89026200	Enhancers	Primary B cells from cord blood	blood

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