Variant report

Variant	rs6872445
Chromosome Location	chr5:89007299-89007300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10428551	1.00[EUR][1000 genomes]
rs11949880	1.00[EUR][1000 genomes]
rs12109697	1.00[EUR][1000 genomes]
rs13354364	1.00[EUR][1000 genomes]
rs13357683	1.00[EUR][1000 genomes]
rs6452856	1.00[EUR][1000 genomes]
rs6877903	1.00[EUR][1000 genomes]
rs6889960	1.00[EUR][1000 genomes]
rs73180667	1.00[EUR][1000 genomes]
rs73180668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73182633	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73182634	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73186550	1.00[EUR][1000 genomes]
rs73770752	1.00[EUR][1000 genomes]
rs73770758	1.00[EUR][1000 genomes]
rs73770765	1.00[EUR][1000 genomes]
rs7709100	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533373	chr5:88062497-89028098	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89001000-89009000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:89002400-89007800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:89002600-89008000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:89002800-89008000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:89002800-89008400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:89002800-89010800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:89002800-89011000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:89006000-89011000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:89007000-89007800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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