Variant report

Variant	rs10429002
Chromosome Location	chr7:124762705-124762706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs28495399	0.86[EUR][1000 genomes]
rs56027755	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201984	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56814856	0.86[EUR][1000 genomes]
rs57238558	0.86[EUR][1000 genomes]
rs58951741	0.86[EUR][1000 genomes]
rs59925676	0.86[EUR][1000 genomes]
rs60625314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60905609	0.86[EUR][1000 genomes]
rs61037807	0.86[EUR][1000 genomes]
rs61043257	0.86[EUR][1000 genomes]
rs61227096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61429625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61449025	0.86[EUR][1000 genomes]
rs61484079	0.86[EUR][1000 genomes]
rs61598567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66597683	0.86[EUR][1000 genomes]
rs66613685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66712671	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67066083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67211225	0.86[EUR][1000 genomes]
rs67449341	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67501403	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67504575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67573953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67617850	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67652374	0.86[EUR][1000 genomes]
rs68032029	0.86[EUR][1000 genomes]
rs6956626	0.94[YRI][hapmap]
rs73227528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432438	0.86[EUR][1000 genomes]
rs73438462	0.90[AMR][1000 genomes]
rs73438468	0.90[AMR][1000 genomes]
rs73438471	0.90[AMR][1000 genomes]
rs73438475	0.90[AMR][1000 genomes]
rs73438483	0.90[AMR][1000 genomes]
rs7791447	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124739800-124776000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:124761800-124762800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr7:124762200-124763000	Enhancers	Fetal Stomach	stomach
4	chr7:124762400-124766000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links