Variant report

Variant	rs56027755
Chromosome Location	chr7:124741902-124741903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124720373..124721901-chr7:124740400..124743244,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10268841	0.89[AMR][1000 genomes]
rs10429002	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28495399	0.86[EUR][1000 genomes]
rs56201984	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56814856	0.86[EUR][1000 genomes]
rs57238558	0.86[EUR][1000 genomes]
rs58951741	0.86[EUR][1000 genomes]
rs59925676	0.86[EUR][1000 genomes]
rs60625314	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60905609	0.86[EUR][1000 genomes]
rs61037807	0.86[EUR][1000 genomes]
rs61043257	0.86[EUR][1000 genomes]
rs61227096	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61429625	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61449025	0.86[EUR][1000 genomes]
rs61484079	0.86[EUR][1000 genomes]
rs61598567	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66597683	0.86[EUR][1000 genomes]
rs66613685	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66712671	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67066083	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67211225	0.86[EUR][1000 genomes]
rs67449341	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67501403	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67504575	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67573953	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67617850	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67652374	0.86[EUR][1000 genomes]
rs68032029	0.86[EUR][1000 genomes]
rs73227528	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73432438	0.86[EUR][1000 genomes]
rs73438481	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73438490	0.89[AMR][1000 genomes]
rs73440515	0.89[AMR][1000 genomes]
rs73440527	0.89[AMR][1000 genomes]
rs73440535	0.89[AMR][1000 genomes]
rs73440543	0.89[AMR][1000 genomes]
rs73440547	0.89[AMR][1000 genomes]
rs73719331	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124739800-124776000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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