Variant report
Variant | rs66712671 |
---|---|
Chromosome Location | chr7:124800398-124800399 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:124794532..124796895-chr7:124797728..124800589,2 | K562 | blood: |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-POT1-4 | chr7:124800028-124800601 | NONHSAT123100 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10429002 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28495399 | 0.86[EUR][1000 genomes] |
rs56027755 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56201984 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56814856 | 0.86[EUR][1000 genomes] |
rs57238558 | 0.86[EUR][1000 genomes] |
rs58951741 | 0.86[EUR][1000 genomes] |
rs59925676 | 0.86[EUR][1000 genomes] |
rs60905609 | 0.86[EUR][1000 genomes] |
rs61037807 | 0.86[EUR][1000 genomes] |
rs61043257 | 0.86[EUR][1000 genomes] |
rs61227096 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61429625 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61449025 | 0.86[EUR][1000 genomes] |
rs61484079 | 0.86[EUR][1000 genomes] |
rs61598567 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs66597683 | 0.86[EUR][1000 genomes] |
rs66613685 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs67066083 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs67211225 | 0.86[EUR][1000 genomes] |
rs67449341 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs67501403 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs67504575 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs67617850 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs67652374 | 0.86[EUR][1000 genomes] |
rs68032029 | 0.86[EUR][1000 genomes] |
rs73227528 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73438462 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs73438468 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs73438471 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs73438475 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs73438483 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs73438490 | 0.80[AFR][1000 genomes] |
rs73440515 | 0.80[AFR][1000 genomes] |
rs73440535 | 0.80[AFR][1000 genomes] |
rs73440547 | 0.80[AFR][1000 genomes] |
rs73719331 | 0.82[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
2 | esv3394090 | chr7:124602150-124900799 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
3 | nsv464708 | chr7:124703756-124805279 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
4 | nsv608344 | chr7:124703756-124805279 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
5 | nsv831119 | chr7:124714009-124890119 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
6 | esv2422188 | chr7:124782873-125254203 | Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
No data |