Variant report

Variant	rs10434602
Chromosome Location	chr5:42236403-42236404
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10059251	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10059910	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11745455	1.00[CEU][hapmap]
rs1393016	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1393019	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1501512	0.90[EUR][1000 genomes]
rs4077983	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4242100	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4242101	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4866735	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4866836	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs632189	0.93[EUR][1000 genomes]
rs6451597	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6451598	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451599	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451606	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9292850	0.82[EUR][1000 genomes]
rs9292851	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv1825573	chr5:42229421-42306381	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880518	chr5:42231896-42375243	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10434602	HNRNPAB	trans	parietal	SCAN
rs10434602	MLL5	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42234600-42237400	Enhancers	Adipose Nuclei	Adipose
2	chr5:42235400-42237600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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