Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OXCT1-2	chr5:42191692-42193270	ucscGeneNc_uc003jms_1

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10059251	0.84[EUR][1000 genomes]
rs10059910	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10434602	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11745455	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs1393016	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1501512	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs275016	0.88[AFR][1000 genomes]
rs275018	0.88[AFR][1000 genomes]
rs275029	0.84[AFR][1000 genomes]
rs4077983	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4242100	0.85[EUR][1000 genomes]
rs4242101	0.85[EUR][1000 genomes]
rs4866735	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4866836	0.84[EUR][1000 genomes]
rs632189	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6451597	0.88[EUR][1000 genomes]
rs6451598	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6451599	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6451606	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9292851	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv4813	chr5:42157598-42202029	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1393019	HNRNPAB	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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