Variant report

Variant	rs632189
Chromosome Location	chr5:42149284-42149285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10059251	0.81[EUR][1000 genomes]
rs10059910	0.87[EUR][1000 genomes]
rs10434602	0.93[EUR][1000 genomes]
rs11745455	1.00[CEU][hapmap]
rs1393016	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1393019	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1501512	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs275016	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs275018	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs275029	0.86[AFR][1000 genomes]
rs4077983	0.87[EUR][1000 genomes]
rs4242100	0.83[EUR][1000 genomes]
rs4242101	0.83[EUR][1000 genomes]
rs4866735	0.87[EUR][1000 genomes]
rs4866836	0.81[EUR][1000 genomes]
rs6451597	0.84[EUR][1000 genomes]
rs6451598	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6451599	0.93[EUR][1000 genomes]
rs6451606	0.86[EUR][1000 genomes]
rs9292851	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1032171	chr5:42015138-42220940	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv462125	chr5:42019110-42192620	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv597885	chr5:42019110-42192620	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1034208	chr5:42119128-42290759	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv969219	chr5:42147728-42169988	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42149000-42149800	ZNF genes & repeats	Liver	Liver
2	chr5:42149000-42150000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr5:42149200-42150400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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