The 2.0 version of rSNPBase

Variant report

Variant rs10438934
Chromosome Location chr18:29618878-29618879
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29599600-29629600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr18:29600600-29620400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr18:29600600-29628400 Weak transcription Hela-S3 cervix
4 chr18:29600800-29632400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr18:29602600-29628600 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr18:29602600-29664200 Weak transcription Brain Inferior Temporal Lobe brain
7 chr18:29602800-29620600 Weak transcription Brain Angular Gyrus brain
8 chr18:29604600-29656000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr18:29606800-29637000 Weak transcription Brain Anterior Caudate brain
10 chr18:29609800-29628600 Weak transcription Small Intestine intestine
11 chr18:29610400-29619600 Weak transcription Ovary ovary
12 chr18:29611600-29628800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr18:29611800-29629000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr18:29613000-29627000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr18:29614000-29620800 Weak transcription Brain Cingulate Gyrus brain
16 chr18:29615200-29648400 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr18:29615600-29620000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr18:29615600-29620600 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr18:29615800-29628400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr18:29616000-29640200 Weak transcription Esophagus oesophagus
21 chr18:29616200-29628800 Weak transcription Gastric stomach
22 chr18:29616800-29619000 Strong transcription Primary hematopoietic stem cells blood
23 chr18:29616800-29619000 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr18:29616800-29619000 Strong transcription Rectal Mucosa Donor 29 rectum
25 chr18:29616800-29619400 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr18:29616800-29619400 Strong transcription Primary T helper naive cells fromperipheralblood blood
27 chr18:29616800-29619400 Strong transcription Duodenum Mucosa Duodenum
28 chr18:29616800-29619800 Strong transcription Primary B cells from cord blood blood
29 chr18:29616800-29620000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
30 chr18:29616800-29620200 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr18:29616800-29620400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
32 chr18:29616800-29620400 Strong transcription Adipose Nuclei Adipose
33 chr18:29617000-29619000 Strong transcription HUES64 Cell Line embryonic stem cell
34 chr18:29617000-29619200 Strong transcription Thymus Thymus
35 chr18:29617000-29619400 Strong transcription H1 Cell Line embryonic stem cell
36 chr18:29617000-29619400 Strong transcription Fetal Muscle Leg muscle
37 chr18:29617000-29620200 Strong transcription Liver Liver
38 chr18:29617000-29620600 Strong transcription HUES6 Cell Line embryonic stem cell
39 chr18:29617200-29619600 Strong transcription HUES48 Cell Line embryonic stem cell
40 chr18:29617200-29620400 Genic enhancers Primary T cells fromperipheralblood blood
41 chr18:29617200-29629600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr18:29617400-29619600 Weak transcription Dnd41 blood
43 chr18:29617400-29620000 Strong transcription Fetal Intestine Small intestine
44 chr18:29617600-29619000 Strong transcription Primary T killer naive cells fromperipheralblood blood
45 chr18:29617600-29619400 Strong transcription Fetal Stomach stomach
46 chr18:29617600-29620200 Genic enhancers Primary T helper cells fromperipheralblood blood
47 chr18:29617800-29619400 Strong transcription Primary monocytes fromperipheralblood blood
48 chr18:29617800-29619400 Genic enhancers Primary T helper cells PMA-I stimulated --
49 chr18:29617800-29619600 Genic enhancers Primary T killer memory cells from peripheral blood blood
50 chr18:29617800-29620400 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015