Variant report

Variant	rs2911636
Chromosome Location	chr18:29627061-29627062
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10438934	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11661718	0.92[ASN][1000 genomes]
rs12455805	0.81[ASN][1000 genomes]
rs12455807	0.81[ASN][1000 genomes]
rs189209	0.81[ASN][1000 genomes]
rs1984583	0.80[ASN][1000 genomes]
rs2006768	0.94[ASN][1000 genomes]
rs2433379	0.96[ASN][1000 genomes]
rs2433380	0.96[ASN][1000 genomes]
rs28621808	0.96[ASN][1000 genomes]
rs2912538	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs336272	0.81[ASN][1000 genomes]
rs35672529	0.83[ASN][1000 genomes]
rs373667	0.95[ASN][1000 genomes]
rs417944	0.80[ASN][1000 genomes]
rs454768	0.95[ASN][1000 genomes]
rs4799627	0.95[ASN][1000 genomes]
rs606590	0.96[ASN][1000 genomes]
rs618790	0.96[ASN][1000 genomes]
rs62093943	0.81[ASN][1000 genomes]
rs641777	0.82[ASN][1000 genomes]
rs685446	0.96[ASN][1000 genomes]
rs686271	0.96[ASN][1000 genomes]
rs72934872	0.91[ASN][1000 genomes]
rs73413971	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8089092	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803283	chr18:29591102-29640430	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
2	nsv1061305	chr18:29609935-29664528	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29599600-29629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:29600600-29628400	Weak transcription	Hela-S3	cervix
3	chr18:29600800-29632400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:29602600-29628600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr18:29602600-29664200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr18:29604600-29656000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:29606800-29637000	Weak transcription	Brain Anterior Caudate	brain
8	chr18:29609800-29628600	Weak transcription	Small Intestine	intestine
9	chr18:29611600-29628800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:29611800-29629000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr18:29615200-29648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr18:29615800-29628400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:29616000-29640200	Weak transcription	Esophagus	oesophagus
14	chr18:29616200-29628800	Weak transcription	Gastric	stomach
15	chr18:29617200-29629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr18:29618000-29628800	Weak transcription	Left Ventricle	heart
17	chr18:29618000-29629000	Weak transcription	Lung	lung
18	chr18:29618400-29639800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr18:29618400-29646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr18:29618600-29628200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr18:29618600-29628600	Weak transcription	Spleen	Spleen
22	chr18:29618600-29642800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr18:29619400-29645400	Weak transcription	Fetal Stomach	stomach
24	chr18:29621200-29628800	Weak transcription	Thymus	Thymus
25	chr18:29621400-29628400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr18:29621400-29628600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr18:29621400-29628600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr18:29621400-29628600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr18:29621400-29628800	Weak transcription	Brain Hippocampus Middle	brain
30	chr18:29621400-29628800	Weak transcription	Brain Substantia Nigra	brain
31	chr18:29622800-29639800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr18:29623200-29627800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr18:29623400-29628200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr18:29623400-29628400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr18:29623600-29627400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr18:29623600-29627600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr18:29623600-29627800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr18:29624200-29628400	Strong transcription	Primary T cells from cord blood	blood
39	chr18:29624400-29627400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr18:29624600-29627400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr18:29624600-29628000	Strong transcription	Fetal Intestine Small	intestine
42	chr18:29624800-29627200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr18:29624800-29628000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr18:29625000-29628400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr18:29625200-29629000	Weak transcription	Right Ventricle	heart
46	chr18:29625400-29627200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr18:29625400-29628600	Weak transcription	Fetal Muscle Leg	muscle
48	chr18:29625400-29628600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr18:29625600-29627200	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr18:29625600-29627400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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