Variant report
| Variant | rs685446 |
|---|---|
| Chromosome Location | chr18:29627969-29627970 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:29599600-29629600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr18:29600600-29628400 | Weak transcription | Hela-S3 | cervix |
| 3 | chr18:29600800-29632400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 4 | chr18:29602600-29628600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 5 | chr18:29602600-29664200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 6 | chr18:29604600-29656000 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 7 | chr18:29606800-29637000 | Weak transcription | Brain Anterior Caudate | brain |
| 8 | chr18:29609800-29628600 | Weak transcription | Small Intestine | intestine |
| 9 | chr18:29611600-29628800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 10 | chr18:29611800-29629000 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 11 | chr18:29615200-29648400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 12 | chr18:29615800-29628400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 13 | chr18:29616000-29640200 | Weak transcription | Esophagus | oesophagus |
| 14 | chr18:29616200-29628800 | Weak transcription | Gastric | stomach |
| 15 | chr18:29617200-29629600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 16 | chr18:29618000-29628800 | Weak transcription | Left Ventricle | heart |
| 17 | chr18:29618000-29629000 | Weak transcription | Lung | lung |
| 18 | chr18:29618400-29639800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 19 | chr18:29618400-29646800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 20 | chr18:29618600-29628200 | Weak transcription | Fetal Muscle Trunk | muscle |
| 21 | chr18:29618600-29628600 | Weak transcription | Spleen | Spleen |
| 22 | chr18:29618600-29642800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 23 | chr18:29619400-29645400 | Weak transcription | Fetal Stomach | stomach |
| 24 | chr18:29621200-29628800 | Weak transcription | Thymus | Thymus |
| 25 | chr18:29621400-29628400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 26 | chr18:29621400-29628600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 27 | chr18:29621400-29628600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 28 | chr18:29621400-29628600 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 29 | chr18:29621400-29628800 | Weak transcription | Brain Hippocampus Middle | brain |
| 30 | chr18:29621400-29628800 | Weak transcription | Brain Substantia Nigra | brain |
| 31 | chr18:29622800-29639800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 32 | chr18:29623400-29628200 | Weak transcription | Primary B cells from peripheral blood | blood |
| 33 | chr18:29623400-29628400 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
| 34 | chr18:29624200-29628400 | Strong transcription | Primary T cells from cord blood | blood |
| 35 | chr18:29624600-29628000 | Strong transcription | Fetal Intestine Small | intestine |
| 36 | chr18:29624800-29628000 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 37 | chr18:29625000-29628400 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 38 | chr18:29625200-29629000 | Weak transcription | Right Ventricle | heart |
| 39 | chr18:29625400-29628600 | Weak transcription | Fetal Muscle Leg | muscle |
| 40 | chr18:29625400-29628600 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 41 | chr18:29625600-29628400 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 42 | chr18:29626000-29657200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 43 | chr18:29626200-29628400 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 44 | chr18:29626200-29628600 | Weak transcription | Fetal Thymus | thymus |
| 45 | chr18:29626200-29628800 | Weak transcription | Liver | Liver |
| 46 | chr18:29626200-29639800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 47 | chr18:29626400-29628200 | Weak transcription | Primary hematopoietic stem cells | blood |
| 48 | chr18:29626400-29628400 | Weak transcription | Fetal Intestine Large | intestine |
| 49 | chr18:29626800-29630800 | Enhancers | Primary B cells from cord blood | blood |
| 50 | chr18:29627000-29628400 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
