The 2.0 version of rSNPBase

Variant report

Variant rs2912538
Chromosome Location chr18:29627131-29627132
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29599600-29629600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr18:29600600-29628400 Weak transcription Hela-S3 cervix
3 chr18:29600800-29632400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr18:29602600-29628600 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr18:29602600-29664200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr18:29604600-29656000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr18:29606800-29637000 Weak transcription Brain Anterior Caudate brain
8 chr18:29609800-29628600 Weak transcription Small Intestine intestine
9 chr18:29611600-29628800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr18:29611800-29629000 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr18:29615200-29648400 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr18:29615800-29628400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr18:29616000-29640200 Weak transcription Esophagus oesophagus
14 chr18:29616200-29628800 Weak transcription Gastric stomach
15 chr18:29617200-29629600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr18:29618000-29628800 Weak transcription Left Ventricle heart
17 chr18:29618000-29629000 Weak transcription Lung lung
18 chr18:29618400-29639800 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr18:29618400-29646800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr18:29618600-29628200 Weak transcription Fetal Muscle Trunk muscle
21 chr18:29618600-29628600 Weak transcription Spleen Spleen
22 chr18:29618600-29642800 Weak transcription H9 Cell Line embryonic stem cell
23 chr18:29619400-29645400 Weak transcription Fetal Stomach stomach
24 chr18:29621200-29628800 Weak transcription Thymus Thymus
25 chr18:29621400-29628400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr18:29621400-29628600 Weak transcription Brain Cingulate Gyrus brain
27 chr18:29621400-29628600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr18:29621400-29628600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr18:29621400-29628800 Weak transcription Brain Hippocampus Middle brain
30 chr18:29621400-29628800 Weak transcription Brain Substantia Nigra brain
31 chr18:29622800-29639800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr18:29623200-29627800 Strong transcription Primary T helper naive cells fromperipheralblood blood
33 chr18:29623400-29628200 Weak transcription Primary B cells from peripheral blood blood
34 chr18:29623400-29628400 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr18:29623600-29627400 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr18:29623600-29627600 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr18:29623600-29627800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr18:29624200-29628400 Strong transcription Primary T cells from cord blood blood
39 chr18:29624400-29627400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
40 chr18:29624600-29627400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr18:29624600-29628000 Strong transcription Fetal Intestine Small intestine
42 chr18:29624800-29627200 Strong transcription Primary T helper naive cells from peripheral blood blood
43 chr18:29624800-29628000 Strong transcription Primary hematopoietic stem cells short term culture blood
44 chr18:29625000-29628400 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr18:29625200-29629000 Weak transcription Right Ventricle heart
46 chr18:29625400-29627200 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr18:29625400-29628600 Weak transcription Fetal Muscle Leg muscle
48 chr18:29625400-29628600 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr18:29625600-29627200 Strong transcription H1 Cell Line embryonic stem cell
50 chr18:29625600-29627400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015