Variant report

Variant	rs10444029
Chromosome Location	chr10:112815919-112815920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10885062	0.82[EUR][1000 genomes]
rs10885063	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10885066	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885067	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885068	0.85[ASN][1000 genomes]
rs10885070	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885079	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11195382	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11195400	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11195406	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12416020	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327551	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1327555	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1800544	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4335469	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4597005	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918612	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918613	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918614	0.83[ASN][1000 genomes]
rs521674	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs602618	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs638019	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7079511	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7901832	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7904892	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7909407	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7915073	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7915214	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112813200-112817000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:112815400-112816000	Active TSS	Primary T cells from cord blood	blood

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