Variant report

Variant	rs7909407
Chromosome Location	chr10:112792736-112792737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10444029	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10885062	0.82[EUR][1000 genomes]
rs10885063	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885066	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885067	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10885068	0.85[ASN][1000 genomes]
rs10885070	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11195382	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11195400	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11195406	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12416020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1327551	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1327555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1800544	0.89[EUR][1000 genomes]
rs4335469	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4597005	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918612	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918613	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4918614	0.84[ASN][1000 genomes]
rs521674	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs602618	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs638019	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7079511	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7901832	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7904892	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7915073	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7915214	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112765000-112794200	Weak transcription	NH-A	brain
2	chr10:112765000-112794400	Weak transcription	NHLF	lung
3	chr10:112765200-112794200	Weak transcription	NHEK	skin
4	chr10:112770800-112798800	Weak transcription	HMEC	breast
5	chr10:112773000-112793200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:112773000-112794000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:112781000-112794200	Weak transcription	HSMM	muscle
8	chr10:112783000-112794200	Weak transcription	Osteobl	bone
9	chr10:112783000-112794400	Weak transcription	HSMMtube	muscle
10	chr10:112783400-112801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:112783600-112794200	Weak transcription	NHDF-Ad	bronchial
12	chr10:112783800-112794200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:112790000-112793200	Weak transcription	Pancreas	Pancrea
14	chr10:112790000-112793600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:112791200-112793400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:112791400-112792800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:112791600-112792800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:112791600-112792800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:112791600-112793000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:112791600-112793400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:112791800-112792800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
22	chr10:112792400-112793000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:112792400-112793000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:112792600-112792800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:112792600-112792800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr10:112792600-112792800	ZNF genes & repeats	Aorta	Aorta
27	chr10:112792600-112793000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:112792600-112793400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:112792600-112794200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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