Variant report

Variant	rs602618
Chromosome Location	chr10:112843085-112843086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444029	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10787294	0.88[YRI][hapmap]
rs10885068	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10885070	0.82[CEU][hapmap];0.82[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap]
rs10885077	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10885079	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11195400	0.82[CEU][hapmap];0.86[TSI][hapmap]
rs11195406	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12416020	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1327551	0.82[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1327555	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1800544	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918613	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs521674	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs638019	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7079511	0.82[CEU][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap]
rs7909407	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs602618	XPNPEP1	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112838400-112847200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:112839400-112843400	Weak transcription	Spleen	Spleen
3	chr10:112839400-112848800	Weak transcription	Right Atrium	heart
4	chr10:112840400-112844000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:112840400-112844400	Enhancers	Fetal Brain Male	brain
6	chr10:112841000-112846200	Enhancers	Adipose Nuclei	Adipose
7	chr10:112841200-112844000	Enhancers	Pancreas	Pancrea
8	chr10:112842000-112843200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:112842000-112843400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:112842200-112843200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr10:112842200-112846800	Weak transcription	Stomach Mucosa	stomach
12	chr10:112842400-112843200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:112842400-112843200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:112842400-112843800	Enhancers	Placenta	Placenta
15	chr10:112842800-112844600	Weak transcription	Ovary	ovary
16	chr10:112843000-112843200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:112843000-112843400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:112843000-112844000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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