Variant report

Variant	rs638019
Chromosome Location	chr10:112831829-112831830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10444029	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10885068	0.83[JPT][hapmap]
rs10885079	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11195406	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12416020	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1327551	0.80[EUR][1000 genomes]
rs1327555	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1800544	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918613	0.85[YRI][hapmap]
rs521674	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs602618	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7909407	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112829800-112835600	Weak transcription	Pancreas	Pancrea
2	chr10:112831400-112835600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:112831600-112832000	Bivalent Enhancer	Fetal Thymus	thymus
4	chr10:112831600-112832200	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr10:112831800-112832800	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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