Variant report

Variant	rs10445863
Chromosome Location	chr2:115929241-115929242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10182527	0.98[ASN][1000 genomes]
rs10195710	0.99[ASN][1000 genomes]
rs10445864	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496484	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12613673	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12711818	0.94[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12711819	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12711821	0.98[ASN][1000 genomes]
rs17355498	0.98[ASN][1000 genomes]
rs4131302	0.80[MEX][hapmap]
rs4356670	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4547539	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6729043	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7571413	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115926200-115932400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:115926400-115930200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:115926400-115930600	Weak transcription	Fetal Intestine Large	intestine
4	chr2:115929200-115929800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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