Variant report

Variant	rs12711818
Chromosome Location	chr2:115922821-115922822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10182527	0.95[ASN][1000 genomes]
rs10195710	0.95[ASN][1000 genomes]
rs10445863	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10445864	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10496484	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12613673	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12711819	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12711821	0.95[ASN][1000 genomes]
rs17355498	0.96[ASN][1000 genomes]
rs4131302	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs4356670	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4547539	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6542249	0.87[CEU][hapmap]
rs6729043	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7571413	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12711818	IL1F7	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115921400-115923400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:115921400-115927800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:115922800-115923000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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