Variant report

Variant	rs12711821
Chromosome Location	chr2:115940763-115940764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10182527	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10195710	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10445863	0.98[ASN][1000 genomes]
rs10445864	0.98[ASN][1000 genomes]
rs10496484	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12613673	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12711818	0.95[ASN][1000 genomes]
rs12711819	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17355498	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4356670	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4547539	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6729043	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115932600-115946400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:115938400-115941600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:115940200-115941400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:115940200-115941400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:115940200-115941600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:115940200-115941600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:115940400-115940800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr2:115940400-115940800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
9	chr2:115940400-115941000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:115940600-115945400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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