Variant report

Variant	rs4547539
Chromosome Location	chr2:115917198-115917199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10182527	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10195710	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10445863	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10445864	0.89[ASN][1000 genomes]
rs10496484	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12613673	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12711818	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12711819	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12711821	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17355498	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4356670	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6729043	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3433596	chr2:115917139-115917366	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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