Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:3867578..3871255-chr6:3875568..3878363,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11242887	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11242889	0.99[EUR][1000 genomes]
rs11755819	0.81[EUR][1000 genomes]
rs2490034	0.94[EUR][1000 genomes]
rs2490050	0.94[EUR][1000 genomes]
rs2490052	0.94[EUR][1000 genomes]
rs2490053	0.94[EUR][1000 genomes]
rs2490054	0.94[EUR][1000 genomes]
rs2490055	0.94[EUR][1000 genomes]
rs2496386	0.94[EUR][1000 genomes]
rs9392531	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1024414	chr6:3862744-3898734	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3871400-3883600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:3873000-3883800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:3874600-3878200	Weak transcription	Placenta	Placenta
4	chr6:3874600-3878400	Weak transcription	Lung	lung
5	chr6:3875000-3878200	Weak transcription	HepG2	liver
6	chr6:3876600-3881600	Weak transcription	Fetal Brain Male	brain
7	chr6:3876800-3881200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:3876800-3883800	Weak transcription	Right Atrium	heart
9	chr6:3877000-3878800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:3877000-3879400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:3877000-3883800	Weak transcription	Psoas Muscle	Psoas
12	chr6:3877200-3881800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:3877400-3878400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:3877400-3882600	Weak transcription	NHDF-Ad	bronchial
15	chr6:3877400-3882800	Weak transcription	HSMMtube	muscle
16	chr6:3877400-3887400	Weak transcription	Left Ventricle	heart
17	chr6:3877600-3879000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:3877600-3882600	Weak transcription	Osteobl	bone
19	chr6:3877600-3882800	Weak transcription	HSMM	muscle
20	chr6:3877800-3878200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:3878000-3880000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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