Variant report

Variant	rs11755819
Chromosome Location	chr6:3871559-3871560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10447476	0.81[EUR][1000 genomes]
rs11242889	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2490034	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490050	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490052	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490053	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490054	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490055	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2496386	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9392531	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1024414	chr6:3862744-3898734	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3868200-3873000	Enhancers	Liver	Liver
2	chr6:3868600-3872600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:3868600-3876200	Weak transcription	Right Atrium	heart
4	chr6:3868800-3872400	Weak transcription	NHEK	skin
5	chr6:3868800-3874400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:3869000-3875800	Weak transcription	HSMM	muscle
7	chr6:3869200-3876000	Weak transcription	HSMMtube	muscle
8	chr6:3869800-3872800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:3869800-3874400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:3870000-3872400	Weak transcription	Lung	lung
11	chr6:3870000-3872600	Weak transcription	NHDF-Ad	bronchial
12	chr6:3870200-3872600	Weak transcription	Esophagus	oesophagus
13	chr6:3870200-3874400	Enhancers	Fetal Intestine Large	intestine
14	chr6:3870200-3874800	Enhancers	Fetal Intestine Small	intestine
15	chr6:3870200-3875800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:3870800-3872600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:3871000-3872400	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:3871000-3874600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:3871000-3875000	Enhancers	HepG2	liver
20	chr6:3871200-3872400	Weak transcription	Small Intestine	intestine
21	chr6:3871200-3874000	Weak transcription	A549	lung
22	chr6:3871200-3874200	Weak transcription	Placenta	Placenta
23	chr6:3871400-3883600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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