Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:3867578..3871255-chr6:3875568..3878363,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10447476	0.99[EUR][1000 genomes]
rs11242887	0.82[EUR][1000 genomes]
rs11755819	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2490034	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2490050	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490052	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490053	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490054	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490055	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2496386	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9392531	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1024414	chr6:3862744-3898734	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:3868600-3876200	Weak transcription	Right Atrium	heart
2	chr6:3869200-3876000	Weak transcription	HSMMtube	muscle
3	chr6:3871400-3883600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:3873000-3883800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:3873400-3876000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:3874400-3876600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:3874400-3876800	Weak transcription	HUVEC	blood vessel
8	chr6:3874600-3876400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:3874600-3878200	Weak transcription	Placenta	Placenta
10	chr6:3874600-3878400	Weak transcription	Lung	lung
11	chr6:3874800-3876200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:3875000-3876400	Weak transcription	Psoas Muscle	Psoas
13	chr6:3875000-3878200	Weak transcription	HepG2	liver
14	chr6:3875400-3876000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:3875600-3876400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:3875800-3876000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:3875800-3876200	Enhancers	HSMM	muscle
18	chr6:3875800-3877000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:3875800-3877400	Enhancers	NHDF-Ad	bronchial
20	chr6:3875800-3877600	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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